Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015874421.1_cds_XP_016435491.1_31447
CDS Infomation

[gene=LOC107761738] [db_xref=GeneID:107761738] [protein=linoleate 9S-lipoxygenase 6-like] [protein_id=XP_016435491.1] [location=join(11668..11863,17212..17501,17595..17835,18950..19291,19373..19458,19565..19672,19763..20067,20169..20432,20541..21294)] [gbkey=CDS]
Sequence

ATGTTTCCGATAAAAAATATTGTTGATCGACTAACTGGGCATAATGACTCAAAGAAAGTC
AAAGGAATTGTGGTGATGATGAAGAAGAATGCTTTAGACTTTACTGATATCGCTGGCTCC
GTTGTTGATGGAGTTCTCGAGTTCCTTGGCCAGAAGGTCTCTTTGCAATTGATCAGTTCT
GCTCATGGTGATCCAGCAAATGATTTACAAGGCAAACACAGCAATCCAGCCTACTTGGAG
AAGTGGCTGACTACCATAACACCATTAACAGCAGGTGAATCAGCGTATAGTGTGACATTT
GATTGGGAGGAGGAGTTTGGGGTTCCAGGTGCATTCATCATAAAGAATTTGCATTTCACT
GAGTTCTTCCTCAAGTCAGTTACCCTTGAAGATGTTCCCAATCATGGCAAGGTTCATTTT
GTCTGCAATTCTTGGGTATATCCTGCAAGTAAATACAAGTCGGACCGCATCTTCTTTGTA
AATAAGACATATCTTCCAAGTGAAACACCAGCACCTTTGCGCAAATACAGAGAAAACGAA
TTACTGACCTTACGAGGAGATGGGACTGGAAAGCTTGAGGCTTGGGACAGGGTTTATGAT
TATGCTTTCTATAATGACTTAGGTGATCCAGACCAAGGTGCACAACATGTCAGACCTATC
TTGGGAGGCTCCTCTGACTACCCGTACCCTCGAAGAGGAAGAACAGGCAGAGCCCCAACA
AGAACAGATCCTGAAAGTGAAAGCAGGATTCCACTGCTTTTGAGCTTAGACATCTATGTA
CCAAGAGACGAGCGTTTTGGACACTTGAAGTTATCAGACTTCCTAACTTACGCTTTGAAA
TCGATGGTTCAATTCATCCTCCCTGAATTACATGCTCTGTTCGATAGCACCCCTAACGAG
TTTGACAGTTTTGAGGATGTGCTCAGACTCTATGAAGGAGGCATCAAGCTTCCTCAAGGC
CCTTTATTTAAAGCTCTTATTAGTGCCATTCCTCTAGAGATGGTAAAAGAACTTCTTCGA
ACTGACGGTGAAGGAATAATGAAATTCCCCACACCTTTGGTTATTAAAGAGGATAAAACT
GCATGGAGAACTGATGAAGAATTTGGAAGAGAAATGTTGGCTGGTGTGAATCCTGTCATA
ATCAGAAATCTCCAAGAATTTCCTCCAAAAAGCAAGTTGGATCCTCAAGTATATGGTAAT
CAAGATAGTACAATTACCATACAACACATAGAGGATAGGTTGGATAGACTAACAATTGAT
GAGGCAATCAAGACTAATAGGCTTTTCATACTGAACCACCATGATATGGTTATGCCATAT
TTGAGGAGAATAAACACCACCACAACAAAAACCTATGCCTCAAGAACTTTGCTCTTCTTG
CAAGATAATGGATCTTTGAAGCCGCTAGCAATTGAACTAAGTTTGCCACATCCAGATGGT
GACCAATTTGGTGTTATTAGTAAAGTGTATACCCCAGCTGATCAAGGTGTCGAGGGCTCC
ATCTGGGAACTGGCTAAAGCTTATGTTGCAGTGAATGACTCAGGTGTTCATCAACTAATT
AGTCATTGGTTAAATACACATGCTGTGATTGAGCCATTTGTGATTGCAACAAATAGGCAA
TTAAGTGTGCTTCACCCGATTCATAAGCTTTTGCATCCTCACTTCCGAGACACAATGAAC
ATAAATGCTATGGCAAGACAAATCCTAATCAATGCTGGTGGAGTTCTTGAGAGTACAGTT
TTTCCTTCCAAATATGCCATGGAAATGTCAGCTGTAGTTTACAAAAACTGGATTTTTCCT
GATCAAGCACTTCCGACTGATCTTGTTAAAAGAGGAATGGCAGTTGAGGACTCGAGTTCC
CCGCATGGCATTCGTTTGTTGATACAGGACTACCCATACGCTGTTGATGGTTTAGAAATA
TGGTCAGCGATCAAAAGTTGGGTAACAGAATATTGCAACTTCTATTATAAATCTGATGAC
TCGATTGTAAAAGACAATGAACTCCAAGCTTGGTGGAAGGAACTCCGCGAAGAGGGACAC
GGGGACCTAAAAGATGAACCTTGGTGGCCTAAAATGGAAAATTGCCAAGAGCTAATAGAT
TCTTGCACCATCATTATATGGACAGCTTCTGCACTTCATGCAGCGGTCAATTTTGGTCAA
TATCCTTACGCCGGTTATCTTCCAAATCGTCCTACAGTAAGTCGAAGATTTATGCCAGAG
CCAGGTACTTCTGAGTACGAAGTGCTAAAGACAAATCCTGATAAGGCATTCCTAAGAACA
ATCACTGCTCAATTGCAGACACTGCTTGGTGTTTCCCTTATAGAGATATTATCAAGGCAT
ACTTCAGATGAGATTTACCTCGGACAGAGGGACTCCCCTATATGGACAAATGACGAAGAA
CCCCTCGCTGCTTTTGAGAGATTCGGCAACAAGTTGAGTGACATTGAAAATCGGATTATA
GAAATGAATGGTGACCAGATATGGAGGAACAGGTTAGGGCCTATTAAGGCTCCATACACA
CTACTCTTCCCAACAAGCCAAGGGGGACTCACAGCCAAAGGAATTCCTAACAGTGTATCT
ATATAA

Peptide Sequence

PEP ID

XP_016435491.1
PEP Infomation

PREDICTED: linoleate 9S-lipoxygenase 6-like [Nicotiana tabacum]
Sequence

MFPIKNIVDRLTGHNDSKKVKGIVVMMKKNALDFTDIAGSVVDGVLEFLGQKVSLQLISS
AHGDPANDLQGKHSNPAYLEKWLTTITPLTAGESAYSVTFDWEEEFGVPGAFIIKNLHFT
EFFLKSVTLEDVPNHGKVHFVCNSWVYPASKYKSDRIFFVNKTYLPSETPAPLRKYRENE
LLTLRGDGTGKLEAWDRVYDYAFYNDLGDPDQGAQHVRPILGGSSDYPYPRRGRTGRAPT
RTDPESESRIPLLLSLDIYVPRDERFGHLKLSDFLTYALKSMVQFILPELHALFDSTPNE
FDSFEDVLRLYEGGIKLPQGPLFKALISAIPLEMVKELLRTDGEGIMKFPTPLVIKEDKT
AWRTDEEFGREMLAGVNPVIIRNLQEFPPKSKLDPQVYGNQDSTITIQHIEDRLDRLTID
EAIKTNRLFILNHHDMVMPYLRRINTTTTKTYASRTLLFLQDNGSLKPLAIELSLPHPDG
DQFGVISKVYTPADQGVEGSIWELAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIATNRQ
LSVLHPIHKLLHPHFRDTMNINAMARQILINAGGVLESTVFPSKYAMEMSAVVYKNWIFP
DQALPTDLVKRGMAVEDSSSPHGIRLLIQDYPYAVDGLEIWSAIKSWVTEYCNFYYKSDD
SIVKDNELQAWWKELREEGHGDLKDEPWWPKMENCQELIDSCTIIIWTASALHAAVNFGQ
YPYAGYLPNRPTVSRRFMPEPGTSEYEVLKTNPDKAFLRTITAQLQTLLGVSLIEILSRH
TSDEIYLGQRDSPIWTNDEEPLAAFERFGNKLSDIENRIIEMNGDQIWRNRLGPIKAPYT
LLFPTSQGGLTAKGIPNSVSI

Transcript Sequence

Gene sequence data has not been registered.